ARSTF Informatics Workgroup

Informatics Tools for Epidemiology, a workgroup of the APHL-CDC-CSTE Antimicrobial Resistance Surveillance Task Force

Environmental Scan Survey Questions and Responses

1.  What stakeholders or partners do you interact with in collecting AR data, e.g. types of individuals, types of facilities, or organizations?
  1. State Public Health Lab
  2. Commercial Labs (LabCorp, Quest, Mayo)
  3. Acute Care Hospitals
  4. Clinical Micro Labs
  5. Dir of Nursing at LTCFs
  6.  LTACH
  7. Infection Preventionists at facilities
  8. CDC/ALRN (Wadsworth, NY)
  9. Loinc/Snomed for CP-CRE/CRE (many different choices/options)
  10. HL7
  11. Vendors – LIS, ADT, infection prevention systems (e.g. MedMined, TheraDoc), EHR systems
  12. Family members, private nurses – especially if patient not in a facility
  13. International projects (subset of US partners)
  14. Clinicians – may work with clinicians more for outpatient settings
  15. Drug treatment, if patient is drug user
  16. Visiting nurses – especially outpatient
  17. State health department
  18. Regional health information organizations (RHIOs), HIEs
  19. Patient safety and quality organizations
  20. Researchers, academic institutions
  21. Local health departments
2.  What publications, guidance documents, plans, reports, surveys, or other written resources should we be aware of when planning our environmental scan? Please include attachments, citations, or links where possible.
 
  1. MA Internal SOPs - See attached MA SOP for CRE and MCR1 (C. auris in progress)
  2. CSTE Best Practices Document -https://www.cste2.org/Publications/CRE_ELR_Best_Practices_FINALv1.0_20170515.pdf
  3. CSTE  Operational Guidance - https://www.cste2.org/Publications/CP_CRE_Operational_guidance_20170601.pdf
  4. CSTE Website (Position statements)
  5. CDC Inter-facility Patient Transfer form - https://www.cdc.gov/hai/pdfs/toolkits/infectioncontroltransferformexample1.pdf
  6. Oregon CRE Toolkit (http://www.oregon.gov/oha/PH/DiseasesConditions/DiseasesAZ/CRE1/cre_toolkit.pdf)
  7. CDC Interim Guidance for Public Health Response to MDROs (https://www.cdc.gov/hai/outbreaks/docs/Health-Response-Contain-MDRO.pdf)
  8. Prevention Tools Kits (HAI) - https://www.cdc.gov/hai/prevent/prevention_tools.html
  9. Journals
  10. Clinical microbiology informatics: http://cmr.asm.org/content/27/4/1025.full.pdf 
  11. ARLN documentation
  12. NHSN documentation
  13. Information on systems for malaria, TB, STDs, enterics
  14. NARMS, whole genome sequencing
  15. HL7, MMGs
3.  What tools, systems, software, hardware, or other technical elements should we consider in our environmental scan?
 
  1. Surveillance system
  2. Paper and fax for labs/medical notes, not sharing information between systems electronically (MA transfer a CRE case to Rhode Island)
  3. LIMS (internal and external systems)
  4. ELR (state system and external facilities) - 2.3 vs 2.5 HL7 message
  5. Antibiograms (Adobe LifeCycle)
  6. Ability to receive susceptibility data
  7. SaTScan
  8. WebGIS (ESRI)
  9. Notepad ++
  10. 7 Edit
  11. NHSN
  12. XDRO registries
  13. Internal infection control systems (e.g. Theradoc, MedMined)
  14. WHONet
  15. Third party intermediaries for data exchange, e.g. AIMS
  16. ARLN portal
  17. Redcap
  18. Local, homegrown products
  19. Visualization tools, e.g. tableau, WebGIS, Sanger Institute tools – spatial epidemiology, WGS analysis, micro react
  20. NARMS
  21. HL7, MMGs
4.  Any other information we should be aware of?
  1. Lots of challenges around receiving the labs with susceptibilities - ELR vs Paper (data entry time and QA on manual data entry)
  2. Facility ELR reporting challenges – both using proper test/result as well as syntax (parent/child, reference ranges)
  3. Working with Lab staff at facilities
  4. How to track patients between facilities (network diagram)

Comments & Events

Marisa D'Angeli
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Marisa D'Angeli
D'Angeli, Marisa (DOH) would like to recall the message, "(ARSTF Informatics Workgroup) Environmental Scan Survey Questions and Responses".
Marisa D'Angeli
Hi Monica,

Thanks for sending this out. I couldn’t find it on Basecamp. Will reply a bit later today.
Marisa
Marisa D'Angeli
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Marisa D'Angeli
D'Angeli, Marisa (DOH) would like to recall the message, "(ARSTF Informatics Workgroup) Environmental Scan Survey Questions and Responses".
Marisa D'Angeli
Disregard encrypted email.

Hi Monica,
Please see below in red font. I didn’t have much to add.
Best,
Marisa
WHONET Group
Hi Monica,

Here are a few small comments. Thanks!



The correct capitalizations are:

1. “WHONET”
2. “REDCap” for “Research Electronic Data Capture”



For relevant guidance/publications, I would add the CLSI M39 document:

https://clsi.org/standards/products/microbiology/documents/m39/



I look forward to seeing everyone seeing Atlanta.



John
Monica Huang turned on public link sharing for this message on